Projects
Publications
Personalized Connectome-Based Modeling in Patients with Semi-Acute Phase TBI: Relationship to Acute Neuroimaging and 6 Month Follow-Up
Tyler Good, Michael Schirner, Kelly Shen, Petra Ritter, Pratik Mukherjee, Brian Levine and Anthony Randal McIntosh
eNeuro. 9(1) (2022)
Pre- and post-surgery brain tumor multimodal magnetic resonance imaging data optimized for large scale computational modelling
Hannelore Aerts, Nigel Colenbier, Hannes Almgren, Thijs Dhollander, Javier Rasero Daparte, Kenzo Clauw, Amogh Johri, Jil Meier, Jessica Palmer, Michael Schirner, Petra Ritter & Daniele Marinazzo
Sci Data. 9, 676 (2022)
Analysis of acute COVID-19 including chronic morbidity: protocol for the deep phenotyping National Pandemic Cohort Network in Germany (NAPKON-HAP)
Fridolin Steinbeis, Charlotte Thibeault, Sarah Steinbrecher, Yvonne Ahlgrimm, Ira an Haack, Dietrich August, Beate Balzuweit, Carla Bellinghausen, Sarah Berger, Irina Chaplinskaya-Sobol, Oliver Cornely, Patrick Doeblin, Matthias Endres, Claudia Fink, Carsten Finke, Sandra Frank, Sabine Hanß, Tim Hartung, Johannes Christian Hellmuth, Susanne Herold, Peter Heuschmann, Jan Heyckendorf, Ralf Heyder, Stefan Hippenstiel, Wolfgang Hoffmann, Sebastian Ulrich Kelle, Philipp Knape, Philipp Koehler, Lucie Kretzler, David Manuel Leistner, Jasmin Lienau, Roberto Lorbeer, Bettina Lorenz-Depiereux, Constanze Dorothea Lüttke, Knut Mai, Uta Merle, Lil Antonia Meyer-Arndt, Olga Miljukov, Maximilian Muenchhoff, Moritz Müller-Plathe, Julia Neuhann, Hannelore Neuhauser, Alexandra Nieters, Christian Otte, Daniel Pape, Rafaela Maria Pinto, Christina Pley, Annett Pudszuhn, Philipp Reuken, Siegberg Rieg, Petra Ritter, Gernot Rohde, Maria Rönnefarth, Michael Ruzicka, Jens Schaller, Anne Schmidt, Sein Schmidt, Verena Schwachmeyer, Georg Schwanitz, Werner Seeger, Dana Stahl, Nicole Stobäus, Hans Christian Stubbe, Norbert Suttorp, Bettina Temmesfeld, Sylvia Thun, Paul Triller, Frederik Trinkmann, Istvan Vadasz, Heike Valentin, Maria Vehreschild, Christof von Kalle, Marie von Lilienfeld-Toal, Joachim Weber, Tobias Welte, Christian Wildberg, Robert Wizimirski, Saskia Zvork, Leif Erik Sander, Janne Vehreschild, Thomas Zoller, Florian Kurth & Martin Witzenrath
Infection. 52, 93–104 (2024)
Human connectome topology directs cortical traveling waves and shapes frequency gradients
Dominik P. Koller, Michael Schirner & Petra Ritter
Nat Commun. 15, 3570 (2024)
Virtual brain simulations reveal network-specific parameters in neurodegenerative dementias
Anita Monteverdi, Fulvia Palesi, Michael Schirner, Francesca Argentino, Mariateresa Merante, Alberto Redolfi, Francesca Conca, Laura Mazzocchi, Stefano F. Cappa, Matteo Cotta Ramusino, Alfredo Costa, Anna Pichiecchio, Lisa M. Farina, Viktor Jirsa, Petra Ritter, Claudia A.M. Gandini Wheeler-Kingshott, Egidio D’Angelo
Front Aging Neurosci. 15:1204134 (2023)
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)
Russell A. Poldrack, Christopher J. Markiewicz, Stefan Appelhoff, Yoni K. Ashar, Tibor Auer, Sylvain Baillet, Shashank Bansal, Leandro Beltrachini, Christian G. Benar, Giacomo Bertazzoli, Suyash Bhogawar, Ross W. Blair, Marta Bortoletto, Mathieu Boudreau, Teon L. Brooks, Vince D. Calhoun, Filippo Maria Castelli, Patricia Clement Alexander L. Cohen, Julien Cohen-Adad, Sasha D’Ambrosio, Gilles de Hollander, María de la Iglesia-Vayá, Alejandro de la Vega, Arnaud Delorme, Orrin Devinsky, Dejan Draschkow, Eugene Paul Duff, Elizabeth DuPre, Eric Earl, Oscar Esteban, Franklin W. Feingold, Guillaume Flandin, Anthony Galassi, Giuseppe Gallitto, Melanie Ganz, Rémi Gau, James Gholam, Satrajit S. Ghosh, Alessio Giacomel, Ashley G. Gillman, Padraig Gleeson, Alexandre Gramfort, Samuel Guay, Giacomo Guidali, Yaroslav O. Halchenko, Daniel A. Handwerker, Nell Hardcastle, Peer Herholz, Dora Hermes, Christopher J. Honey, Robert B. Innis, Horea-Ioan Ioanas, Andrew Jahn, Agah Karakuzu, David B. Keator, Gregory Kiar, Balint Kincses, Angela R. Laird, Jonathan C. Lau, Alberto Lazari, Jon Haitz Legarreta, Adam Li, Xiangrui Li, Bradley C. Love, Hanzhang Lu, Eleonora Marcantoni, Camille Maumet, Giacomo Mazzamuto, Steven L. Meisler, Mark Mikkelsen, Henk Mutsaerts, Thomas E. Nichols, Aki Nikolaidis, Gustav Nilsonne, Guiomar Niso, Martin Norgaard, Thomas W. Okell, Robert Oostenveld, Eduard Ort, Patrick J. Park, Mateusz Pawlik, Cyril R. Pernet, Franco Pestilli, Jan Petr, Christophe Phillips, Jean-Baptiste Poline, Luca Pollonini, Pradeep Reddy Raamana, Petra Ritter, Gaia Rizzo, Kay A. Robbins, Alexander P. Rockhill, Christine Rogers, Ariel Rokem, Chris Rorden, Alexandre Routier, Jose Manuel Saborit-Torres, Taylor Salo, Michael Schirner, Robert E. Smith, Tamas Spisak, Julia Sprenger, Nicole C. Swann, Martin Szinte, Sylvain Takerkart, Bertrand Thirion, Adam G. Thomas, Sajjad Torabian, Gael Varoquaux, Bradley Voytek, Julius Welzel, Martin Wilson, Tal Yarkoni, and Krzysztof J. Gorgolewski
ArXiv [Preprint] arXiv:2309.05768v2 (2024)
Lesion aware automated processing pipeline for multimodal neuroimaging stroke data and The Virtual Brain (TVB)
Patrik Bey, Kiret Dhinds, Amrit Kashyap, Michael Schirner, Jan Feldheim, Marlene Bönstrup, Robert Schulz, Bastian Cheng, Götz Thomalla, Christian Gerloff, Petra Ritter
bioRxiv (2023)
Whole-brain modeling of the differential influences of amyloid-beta and tau in Alzheimer’s disease
Gustavo Patow, Leon Stefanovski, Petra Ritter, Gustavo Deco, Xenia Kobeleva and for the
Alzheimer’s Disease Neuroimaging InitiativeAlz Res Therapy. 15, 210 (2023)
White-matter degradation and dynamical compensation support age-related functional alterations in human brain
Spase Petkoski, Petra Ritter, Viktor K Jirsa
Cereb Cortex. 33(10):6241-6256 (2023)
A deep learning approach to estimating initial conditions of Brain Network Models in reference to measured fMRI data
Amrit Kashyap, Sergey Plis, Petra Ritter and Shella Keilholz
Front. Neurosci. 17:1159914 (2023)
Learning how network structure shapes decision-making for bio-inspired computing
Michael Schirner, Gustavo Deco, Petra Ritter
Nat Commun. 14, 2963 (2023)
Dynamic primitives of brain network interaction
Michael Schirner, Xiaolu Kong, B.T. Thomas Yeo, Gustavo Deco, Petra Ritter
NeuroImage. 250:118928 (2022)
Overcoming the Reproducibility Crisis – Results of the first Community Survey of the German National Research Data Infrastructure for Neuroscience
Carsten M. Klingner, Michael Denker, Sonja Grün, Michael Hanke, Steffen Oeltze-Jafra, Frank W. Ohl, Janina Radny, Stefan Rotter, Hansjörg Scherberger, Alexandra Stein, Thomas Wachtler, Otto W. Witte, Petra Ritter
bioRxiv (2022)
Brain simulation augments machine-learning-based classification of dementia
Paul Triebkorn , Leon Stefanovski, Kiret Dhindsa, Margarita-Arimatea Diaz-Cortes, Patrik Bey, Konstantin Bülau, Roopai Pai, Anreas Spiegler, Ana Solodkin, Viktor Jirsa, Anthony R. McIntosh, Petra Ritter
Alzheimer’s Dement. 2022;8:e12303 (2022)
Research data management in clinical neuroscience: the national research data infrastructure initiative
Carsten M. Klingner, Petra Ritter, Stefan Brodoehl, Christian Gaser, André Scherag, Daniel Güllmar, Felix Rosenow, Ulf Ziemann und Otto W. Witte
Neuroforum. 27(1):35-43 (2021)
NFDI-Neuro: Building a community for neuroscience research data management in Germany
Thomas Wachtler, Pavol Bauer, Michael Denker, Sonja Grün, Michael Hanke, Jan Klein, Steffen Oeltze-Jafra, Petra Ritter, Stefan Rotter, Hansjörg Scherberger, Alexandra Stein und Otto W. Witte
Neuroforum. 27(1):3-15 (2021)
Brain simulation as a cloud service: The Virtual Brain on EBRAINS
Michael Schirner, Lia Domide, Dionysios Perdikis, Paul Triebkorn,...., Agnes Flöel, ...Jochen Mersmann, Viktor Jirsa, Petra Ritter
NeuroImage. 251:118973 (2022)
Virtual deep brain stimulation: Multiscale co-simulation of a spiking basal ganglia model and a whole-brain mean field model with The Virtual Brain
Jil M. Meier, Dionysios Perdikis, André Blickensdörfer, Leon Stefanovski, Qin Liu, Oliver Maith, Helge Ü. Dinkelbach, Javier Baladron, Fred H. Hamker, Petra Ritter
Exp Neurol. 354:114111 (2022)
Unimanual sensorimotor learning—A simultaneous EEG-fMRI aging study
Sabrina Chettouf, Paul Triebkorn, Andreas Daffertshofer, Petra Ritter
Hum Brain Mapp. 2022;43:2348–2364 (2022)
Are unimanual movements bilateral?
Sabrina Chettouf, Laura M. Rueda-Delgado, Ralph de Vries, Petra Ritter, Andreas Daffertshofer
Neurosci & Biobehav Rev. 113:39-50 (2020)
The importance of standards for sharing of computational models and data
Russell A. Poldrack, Franklin Feingold, Michael J. Frank, Padraig Gleeson, Gilles de Hollander, Quentin JM Huys, Bradley C. Love, Christopher J. Markiewicz, Rosalyn Moran, Petra Ritter, Timothy T. Rogers, Brandon M. Turner, Tal Yarkoni, Ming Zhan, Jonathan D. Cohen
Comput Brain & Behav. 2(3-4):229-232 (2019)
Bridging scales in Alzheimer’s disease: Biological framework for brain simulation with The Virtual Brain
Leon Stefanovski, Jil Mona Meier, Roopa Pai, Paul Triebkorn, Tristram Lett, Leon Martin, Konstantin Bülau, Martin Hofmann-Apitius, Ana Solodkin, Anthony McIntosh, Petra Ritter
Front Neuroinform. 15:630172 (2021)
Movement disorders after hypoxic brain injury following cardiac arrest in adults
F. Scheibe, W. J. Neumann, C. Lange, M. Scheel, C. Furth, M. Köhnlein, P. Mergenthaler, J. Schultze‐Amberger, P. Triebkorn, P. Ritter, A. A. Kühn, A. Meisel
Eur J Neurol. 27(10):1937-194 (2020)
Dynamic functional connectivity between order and randomness and its evolution across the human adult lifespan
Demian Battaglia, Thomas Boudou, Enrique C.A. Hansen, Diego Lombardo, Sabrina Chettouf, Andreas Daffertshofer, Anthony R. McIntosh, Joelle Zimmermann, Petra Ritter, Viktor Jirsa
NeuroImage. 222:117156 (2020)
Brain network simulations indicate effects of neuregulin-1 genotype on excitation-inhibition balance in cortical dynamics
Pedro Costa Klein, Ulrich Ettinger, Michael Schirner, Petra Ritter, Dan Rujescu, Peter Falkai, Nikolaos Koutsouleris, Lana Kambeitz-Ilankovic, Joseph Kambeitz
Cereb Cortex. 31(4):2013-2025 (2020)
The importance of cerebellar connectivity on simulated brain dynamics
Fulvia Palesi, Roberta Maria Lorenzi, Claudia Casellato, Petra Ritter, Viktor Jirsa, Claudia A.M. Gandini Wheeler-Kingshott and Egidio D’Angelo
Front Cell Neurosci. 14:240 (2020)
Identifying optimal working points of individual Virtual Brains: A large-scale brain network modelling study
Paul Triebkorn, Joelle Zimmermann, Leon Stefanovski, Dipanjan Roy, Ana Solodkin, Viktor Jirsa, Gustavo Deco, Michael Breakspear, Anthony Randal McIntosh, Petra Ritter
bioRxiv
Linking molecular pathways and large-scale modeling to assess candidate disease mechanisms and pharmacodynamics in Alzheimer’s disease
Leon Stefanovski, Paul Triebkorn, Andreas Spiegler, Margarita-Arimatea Diaz-Cortes, Ana Solodkin, Viktor Jirsa, Anthony Randal McIntosh and Petra Ritter for the Alzheimer's Disease Neuroimaging Initiative
Front Comput Neurosci. 13:54 (2019)
A macaque connectome for large-scale network simulations in The Virtual Brain
Kelly Shen, Gleb Bezgin, Michael Schirner, Petra Ritter, Stefan Everling and Anthony R McIntosh
Sci Data. 6(1):123 (2019)
Modeling brain dynamics after tumor resection using The Virtual Brain
Hannelore Aerts, Michael Schirner, Thijs Dhollander, Ben Jeurissen, Eric Achten, Dirk Van Roost, Petra Ritter and Daniele Marinazzo
NeuroImage. 213: 116738 (2020)
